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C

checkReadableOrThrowError(String, String) - Static method in class com.ibm.bluej.util.common.FileUtil
Ensure that a path exists and is readable, otherwise throw a RuntimeException using a description of the path.
clear() - Method in class com.ibm.bluej.util.common.IdentitySet
 
clone() - Method in class com.ibm.bluej.util.common.Span
 
closeOutputStream(OutputStream) - Static method in class com.ibm.bluej.util.common.FileUtil
 
CollectionUtil - Class in com.ibm.bluej.util.common
 
CollectionUtil() - Constructor for class com.ibm.bluej.util.common.CollectionUtil
 
color - Variable in class com.ibm.bluej.util.common.visualization.BasicJTree.HighlightLabel
 
com.ibm.bluej.util.common - package com.ibm.bluej.util.common
Provides utilities for collection reading, normalization, iteration and data handling
com.ibm.bluej.util.common.visualization - package com.ibm.bluej.util.common.visualization
Provides visualization and formatting utility classes for GUI Java applications
compare(Pair, Pair) - Method in class com.ibm.bluej.util.common.FirstPairComparator
 
compare(MutableDouble, MutableDouble) - Method in class com.ibm.bluej.util.common.MutableDouble.AbsValueComparator
 
compare(Pair, Pair) - Method in class com.ibm.bluej.util.common.SecondPairComparator
 
compare(Span, Span) - Method in class com.ibm.bluej.util.common.Span.LengthComparator
 
compareTo(CompositeSpan) - Method in class com.ibm.bluej.util.common.CompositeSpan
 
compareTo(MutableDouble) - Method in class com.ibm.bluej.util.common.MutableDouble
 
compareTo(Object) - Method in class com.ibm.bluej.util.common.MutableDoubleHashMap.OverlapRecord
 
compareTo(MutableInteger) - Method in class com.ibm.bluej.util.common.MutableInteger
 
compareTo(Span) - Method in class com.ibm.bluej.util.common.Span
 
compareTo(SparseVectors.OverlapRecord<T>) - Method in class com.ibm.bluej.util.common.SparseVectors.OverlapRecord
 
CompositeSpan - Class in com.ibm.bluej.util.common
 
CompositeSpan(int) - Constructor for class com.ibm.bluej.util.common.CompositeSpan
 
CompositeSpan() - Constructor for class com.ibm.bluej.util.common.CompositeSpan
 
CompositeSpan(Iterable<Span>) - Constructor for class com.ibm.bluej.util.common.CompositeSpan
 
compressSpace(String, Collection<Span>) - Static method in class com.ibm.bluej.util.common.Span
 
computeSummaryScores() - Method in class com.ibm.bluej.util.common.PrecisionRecallThreshold
 
computeSummaryScores(double) - Method in class com.ibm.bluej.util.common.PrecisionRecallThreshold
 
computeSummaryScores(double, double) - Method in class com.ibm.bluej.util.common.PrecisionRecallThreshold
 
conditionPMI(Map<S, M>, double, double) - Static method in class com.ibm.bluej.util.common.MutableDoubleHashMap
 
conditionPMI(Map<S, M>) - Static method in class com.ibm.bluej.util.common.MutableDoubleHashMap
 
conditionPMI(Map<S, M>, Map<S, MutableDouble>, Map<T, MutableDouble>, double, double, double) - Static method in class com.ibm.bluej.util.common.MutableDoubleHashMap
 
conditionPMI(Map<S, M>, Map<S, MutableDouble>, Map<T, MutableDouble>, double, double, double) - Static method in class com.ibm.bluej.util.common.SparseVectors
http://en.wikipedia.org/wiki/Pointwise_mutual_information every entry in the co-occurrence matrix is replaced by the pointwise mutual information of the first key and the second key the frequency of the first key is given in firstFreq, the total is in firstTotal so that p(first) is firstFreq.get(first)/firstTotal; similarly for second coTotal is given in the second so that p(first & second) = coOccurrence.get(first).get(second)/coTotal the pmi(x,y) is log(p(x&y) / (p(x) * p(y)) but the matrix gives frequencies
conditionPMI(Map<S, M>) - Static method in class com.ibm.bluej.util.common.SparseVectors
every entry in the co-occurrence matrix is replaced by the pointwise mutaul information of the first key and the second key the frequency of the first key is given in firstFreq, the total is in firstTotal so that p(first) is firstFreq.get(first)/firstTotal; similarly for second coTotal is given in the second so that p(first & second) = coOccurrence.get(first).get(second)/coTotal in this version, the coOccurrence matrix is assumed to be complete, so that the firstFreq, secondFreq and all totals can be inferred from coOccurrence
contains(int) - Method in class com.ibm.bluej.util.common.CompositeSpan
 
contains(Object) - Method in class com.ibm.bluej.util.common.IdentitySet
 
contains(Span) - Method in class com.ibm.bluej.util.common.Span
true if this span contains (or is equal to) s
contains(int) - Method in class com.ibm.bluej.util.common.Span
 
contains(int, int) - Method in class com.ibm.bluej.util.common.Span
 
containsAll(Collection<?>) - Method in class com.ibm.bluej.util.common.IdentitySet
 
convert() - Method in interface com.ibm.bluej.util.common.OldVersionOf
 
ConvertedIterator<S,T> - Class in com.ibm.bluej.util.common
 
ConvertedIterator(Iterator<S>, FunST<S, T>) - Constructor for class com.ibm.bluej.util.common.ConvertedIterator
 
convertToIndex(Map<?, MutableDouble>, int, double) - Static method in class com.ibm.bluej.util.common.MutableDoubleHashMap
 
copyValues(Map<T, MutableDouble>) - Static method in class com.ibm.bluej.util.common.MutableDoubleHashMap
 
copyValues(Map<T, MutableDouble>) - Static method in class com.ibm.bluej.util.common.SparseVectors
 
cosine(double[], double[]) - Static method in class com.ibm.bluej.util.common.DenseVectors
 
cosineSimilarity(Map<S, MutableDouble>, Map<S, MutableDouble>) - Static method in class com.ibm.bluej.util.common.MutableDoubleHashMap
 
cosineSimilarity(Map<S, MutableDouble>, Map<S, MutableDouble>, double) - Static method in class com.ibm.bluej.util.common.MutableDoubleHashMap
 
cosineSimilarity(Map<K, MutableDouble>, Map<K, MutableDouble>) - Static method in class com.ibm.bluej.util.common.SparseVectors
http://en.wikipedia.org/wiki/Cosine_similarity if it would be NaN, it is instead zero
cosineSimilarityAlt(Map<S, MutableDouble>, Map<S, MutableDouble>, double) - Static method in class com.ibm.bluej.util.common.MutableDoubleHashMap
 
cosineSimilarityFlex(Map<S, MutableDouble>, Map<S, MutableDouble>, double, FunST<S, Double>, FunST<Double, Double>) - Static method in class com.ibm.bluej.util.common.MutableDoubleHashMap
 
cosineSimilarityOld(Map<?, MutableDouble>, Map<?, MutableDouble>, double) - Static method in class com.ibm.bluej.util.common.MutableDoubleHashMap
Deprecated. 
crosses(Span) - Method in class com.ibm.bluej.util.common.Span
neither span contains the other, but they do overlap
csvPRCurve(String, int) - Method in class com.ibm.bluej.util.common.PrecisionRecall
 
csvStringSummary() - Method in class com.ibm.bluej.util.common.PrecisionRecall
 
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